Protein Expression

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Overview
Protein expression serves as a ubiquitous tool in research, with five primary systems—bacterial, yeast, insect, mammalian, and Bacillus subtilis—offering researchers a range of options for their specific needs. Tsingke provides a one-stop service from gene synthesis to recombinant protein expression. Our high-throughput expression platform ensures the delivery of high-purity and cost-effective products to accelerate your research project.
Advantages
One-stop service
One-stop service
From sequence design to expression purification
Free codon optimization
Free codon optimization
maximize your expression level
High expression level
High expression level
Optimizing vector selection and screening for high-expression strains
Fast turnaround time
Fast turnaround time
Fast delivery as short as 2 weeks
Service Type
Service Details

Expression System
Introduction
Advantages
Escherichia coli
E. coli stands out as a widely recognized expression system, readily amenable to genetic manipulation, facilitating cost-effective and high-yield production of various recombinant proteins, including cytokines, enzymes, immunogens, and antibody fragments.
- Cost-effective;
- Fast;
- Flexible to scale up;
- Simple transformation operations;
- Protein expression can be optimized through multiple parameters.
Pichia pastoris
The Pichia expression system is highly successful for foreign protein expression, avoiding endotoxin problems seen in bacteria and viral contamination in animal cell cultures. Pichia pastoris, in particular, enables essential posttranslational modifications typical of higher eukaryotes, including signal sequence processing, disulfide bridge formation, and glycosylation.
- High expression levels: Utilizing the methanol-inducible alcohol oxidase I (AOX1) promoter enables precise control of the expression of exogenous genes; cost-effective; 
- Rapid growth with simple cultivation conditions;
- Various host strains and expression vectors are available for intracellular or secretory expression; 
- Efficient protein secretion allows for easy purification and post-translational protein processing, ensuring correct folding and modification of the exogenous protein; superior N-terminal glycosylation capability compared to brewing yeast; 
- Low endotoxin levels.
Baculovirus
Insect cells are a versatile host for expressing a variety of recombinant proteins. Their strong folding capacity and high culture density make them ideal for expressing complex intracellular and viral proteins. Notably, the HPV vaccine Cervarix, produced in insect cells as virus-like particles (VLPs), was approved for human use in 2007. Beyond therapeutic and vaccine applications, insect cell-produced highly active proteins are widely employed in disciplines like biophysics and biochemistry for structural analysis, drug design, and the development of diagnostic reagents.
- High expression levels, especially for complex intracellular and viral proteins; Rapid growth rate; 
- Strong folding capability for complex proteins; 
- Moderate scalability; 
- Extensive post-translational modifications; Glycosylation similar to mammalian cells; The relative ease of enzymatic deglycosylation is advantageous for protein structure research.
- Capable of producing virus-like particles (VLP), such as for HPV vaccine production; 
- Low endotoxin levels.
Mammalian
Mammalian cells have become the preferred host cells for the manufacture of a wide range of biopharmaceuticals. Recombination proteins expressed by the mammalian cell expression system approximate human forms due to post-translation modification, and the mammalian cell expression system is used widely to manufacture therapeutic recombinant proteins. 
- High expression levels; 
- Moderate scalability; 
- The suspension culture characteristics of cells allow for large-scale production;
- Effective protein folding; 
- Suitable for protein secretion; 
- Ample post-translational modifications; 
- Low endotoxin levels.
Bacillus subtilis
Bacillus subtilis, as a Gram-positive bacterium, is considered an ideal host for expressing and secreting foreign proteins in prokaryotic expression systems. Its characteristics of non-pathogenicity, strong protein secretion capabilities, and well-established fermentation foundation and production technologies contribute to its significance as a crucial model strain in prokaryotic expression systems.
- Non-pathogenic;
- Simple cell wall composition; 
- Low codon bias; 
- High solubility of expressed proteins; 
- Suitable for efficient secretion expression of heterologous proteins;
- Good biological activity. 
- Low endotoxin levels;
Facility
Facility
Facility
Facility
Facility
Related Resource
FAQ
What are the advantages of secretory protein expression?
High Protein Stability
Some proteins that are susceptible to degradation by intracellular proteases can be secreted into the periplasm or culture medium, enhancing their stability.
Retention of Native Activity and Structure
Proteins that are inactive when expressed intracellularly can, upon secretion, fold correctly in an appropriate manner, thus increasing their activity.
Simplified Purification Process
Secreted proteins directly enter the culture medium or the periplasmic space, eliminating the need for cell lysis. This reduces interference from host cell impurities and makes the purification process simpler and more cost-effective.
Others
Because the signal peptide and coding sequence are cleaved during secretion, the secreted protein product does not contain the methionine encoded by the amino acid start codon ATG. Methionine can affect the activity of many proteins.
How can I improve protein stability?
Optimize elution conditions by gradually lowering the pH from a high value; neutralize the purified sample promptly, or even neutralize while purifying; prepare and store the sample at low temperatures during the purification process; add protein protectants such as glycerol and Tween; when antibody concentration is high, dilute in time to avoid the risk of aggregation due to high concentration.
Why does glycosylation modification result in a higher molecular weight for proteins?
Glycosylation is a post-translational modification of proteins, involving the addition of sugar chains (oligosaccharides) to proteins. This modification typically occurs on specific amino acid residues of proteins, such as asparagine (N-glycosylation) or serine/threonine (O-glycosylation) residues. Glycosylation leads to an increase in the molecular weight of proteins for the following reasons:
Increased sugar molecule mass:
Sugar chains are composed of multiple monosaccharide units, each with a specific molecular mass. When these sugar chains are added to proteins, they increase the overall molecular mass of the protein.
Diversity and complexity of sugar chains:
Sugar chains can be composed of different monosaccharides, such as glucose, galactose, mannose, fucose, etc., each with a different molecular mass.
The length and branching of sugar chains can also vary, which affects their molecular mass.
Modifications of sugar chains:
After formation, sugar chains may undergo further modifications, such as sulfation or acetylation, which also increase the molecular mass of the sugar chain.
Heterogeneity of sugar chains:
Even the same protein may have different glycosylation patterns, a phenomenon known as glycosylation heterogeneity. This heterogeneity results in multiple glycosylated forms of the protein, each with a slightly different molecular mass.
Impact of sugar chains on protein structure:
Glycosylation not only increases the molecular mass of the protein but can also affect its three-dimensional structure and conformation, thereby influencing its function.
Dynamic changes of sugar chains:
Sugar chains can be dynamically added and removed within cells, and this dynamic change can also affect the protein’s molecular mass.
Due to the increase in molecular mass caused by glycosylation, the migration speed and detection signal of glycosylated proteins in protein analysis, such as SDS-PAGE electrophoresis or mass spectrometry, may differ from those of non-glycosylated proteins. Moreover, glycosylated proteins may also exhibit differences in stability, solubility, and immunogenicity within the organism.
What are the online tools and resources for predicting the effects of point mutations on proteins?
PolyPhen-2: This is a tool used to predict the impact of amino acid substitutions on the structure and function of human proteins. It uses physical and evolutionary comparison methods for prediction. The website is: http://genetics.bwh.harvard.edu/pph2/
ToxinPred: This is an online method for predicting and designing toxic/non-toxic peptide segments. It offers several functions, including peptide design, batch submission, protein scanning, and QMS calculators. The website is: https://webs.iiitd.edu.in/raghava/toxinpred/
SIFT: SIFT (Sorting Intolerant From Tolerant) is a protein point mutation prediction method that uses multiple sequence alignment techniques to assess point mutations in protein sequences and predict their effects on protein function. The website is: http://sift-dna.org and https://sift.bii.a-star.edu.sg/www/SIFT4G_vcf_submit.html
VarSite: This is a database designed to provide structural information for known disease-associated variants in human genes, based on 3D structures from the Protein Data Bank (PDB). The website is: https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/VarSite/GetPage.pl?uniprot_acc=NONE&template=home.html
GVP-MSA: This is a deep model of fitness landscapes used to predict the impact of protein point mutations. The website is: https://gitee.com/yang-jingran/gvp-msa
Deep Mutational Scanning: This is a high-throughput experimental method used to study the relationship between protein sequences and function. Although it is not an online tool, it is an important method for protein function research. Relevant literature can be found at: https://cjb.ijournals.cn/html/cjbcn/2023/9/gc23093710.htm
How can I confirm that the expressed protein is my target protein?
The verification can be done from the following three aspects:
First, at the molecular sequence level, after constructing the expression vector, the expression plasmid is sequenced for confirmation. Sequencing files can be used for verification.
Second, during the expression process, a comparison is made between induced and uninduced lysis buffers. Differences in protein bands can be detected by SDS-PAGE. The difference can be observed at the theoretical size of the target protein.
Lastly, Western blot (WB) validation can be performed using tag antibodies or antibodies specific to the target protein.
If protein verification is needed, protein coverage analysis can be conducted by comparing the theoretical sequence with the actual coverage ratio. However, the purity of the target protein must be greater than 90%. If the purity is lower, the coverage ratio may be affected. For lower purity samples, gel slicing can be performed for further analysis.
Will removing the signal peptide affect the expression of the protein itself?
The expression level of recombinant proteins is not regulated by the signal peptide, so removing the signal peptide does not affect protein expression. However, the signal peptide plays two key roles: on one hand, it is involved in the folding of the protein into its specific spatial structure; on the other hand, it determines the protein's final localization to specific subcellular compartments. Generally, a protein can only function in its specific subcellular compartment. Therefore, the signal peptide has a significant impact on the protein's final activity.The expression level of recombinant proteins is not regulated by the signal peptide, so removing the signal peptide does not affect The expression level of recombinant proteins is not regulated by the signal peptide, so removing the signal peptide does not affect protein expression. However, the signal peptide plays two key roles: on one hand, it is involved in the folding of the protein into its specific spatial structure; on the other hand, it determines the protein's final localization to specific subcellular compartments. Generally, a protein can only function in its specific subcellular compartment. Therefore, the signal peptide has a significant impact on the protein's final activity.
Why is it difficult to express membrane proteins?
The relatively low success rate of membrane protein expression is an experimental result. There are many theories explaining this, and the principles are still debated. Based on our basic understanding, the main reasons are as follows:
Membrane proteins are typically composed of hydrophobic amino acid molecules and hydrophilic molecules connected in a leapfrog manner, forming a simple hydrophilic-hydrophobic transmembrane chemical structure. This structure is similar to the signal peptide structure. For prokaryotic cells, which have simple organelles, it is difficult to perform the complex process of signal peptide recognition and cleavage, guiding proteins to the endoplasmic reticulum and Golgi apparatus for re-packaging and secretion as eukaryotic cells do. Some proteins span the membrane multiple times, which is nearly impossible for prokaryotic cells to complete. Additionally, hydrophobic segments in prokaryotic cells are prone to form inclusion bodies, and hydrophobic peptides may inhibit the translation process, even fusing with the prokaryotic membrane structure to become toxic. As a self-protection mechanism, all organelles will stop protein synthesis.
The potential issues that may arise during membrane protein expression are as follows:
Low expression levels: Due to their complex structure, membrane proteins typically have low expression levels in host cells, making them difficult to detect and purify.
Low solubility: Membrane proteins are usually embedded in the lipid bilayer of the cell membrane, so their solubility in aqueous solutions is low, which increases the difficulty of extraction and purification.
Stability issues: Some membrane proteins may be unstable in vitro and are prone to losing their structure and function during expression or purification.
Differences in lipid composition: The lipid composition of mammalian cells is different from that of insect cells or yeast, which can affect the integration and functionality of membrane proteins.
Purification challenges: Since membrane proteins are tightly associated with membranes, detergents are often required for extraction, which may affect the protein's structure and function.
Conformation maintenance: Maintaining the native conformation of membrane proteins is critical for their function, but it is difficult to achieve this during expression and purification processes.
What are the characteristics of eukaryotic expression systems?
The commonly used eukaryotic expression systems are mammalian, yeast, and insect systems.
- Yeast: This system can express proteins at high levels and has post-translational modification capabilities, making it suitable for large-scale production. It combines the characteristics of both prokaryotic and eukaryotic expression systems.
- Insect: This system possesses the post-translational processing capabilities of eukaryotic expression systems, such as disulfide bond formation, glycosylation, and phosphorylation. This allows the recombinant protein to more closely resemble natural proteins in structure and function. It is suitable for expressing toxic proteins, some membrane proteins, and large proteins, which can be challenging to express in other systems.
- Mammalian: This system has unique advantages in protein initiation, processing, secretion, and glycosylation, making it ideal for expressing large, complete molecules. Proteins produced through post-translational modification in mammalian cells exhibit superior activity compared to proteins produced in prokaryotic systems or yeast/insect cells, and are closer to natural proteins. However, the system is complex, requires high technical expertise, has lower expression yields, and is costlier.
*For Research Use Only. Not for use in diagnostic procedures.
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